package org.fioma.search;


public interface MatchReadCollection {

	public Match getMatch(int i);

	public Match[] getMatches();

	public void addMatchSorted(Match match);

	public int size();

	public void clear();

//	public Read getRead();
//
//	public void setRead(Read read);
//
//	public int getInitialPositionFirstMatch();
//
//	public int getMismatchPositionLastMatch();
//
//	public List<Integer> getJunctionIndexes();
//
//	public List<Integer> getGapIndexes();
}
